CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.25212.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g34920: 1-phosphatidylinositol phosphodiesterase-related (HF=2e-3)

Module size 16 genes

NF 0.14

%ile 26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 98.9 0.87 Ta.25212.1.S1_at CD453992 - - 2e-3 At4g34920 1-phosphatidylinositol phosphodiesterase-related O.I. H.G. S.X.
0.29 39.2 0.93 TaAffx.5696.1.S1_at CA702207 - - 3e-3 At2g20613 unknown protein O.I. H.G. S.X.
0.25 32.1 0.96 Ta.9621.2.S1_at CK211087 - - 7e+0 At5g59470 PQ-loop repeat family protein / transmembrane family protein O.I. H.G. S.X.
0.20 24.0 0.95 Ta.30816.1.S1_at CN008413 GID2L - 2e-1 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.19 22.4 0.93 Ta.8985.1.S1_s_at CA638281 - - 6e+0 At4g16720 60S ribosomal protein L15 (RPL15A) O.I. H.G. S.X.
0.18 21.0 0.96 Ta.30816.1.S1_s_at CN008413 GID2L - 2e-1 At1g49010 myb family transcription factor O.I. H.G. S.X.
0.16 18.2 0.95 Ta.30626.3.S1_a_at CA654616 - - 5e-15 At1g69740 HEMB1 O.I. H.G. S.X.
0.16 18.2 0.95 Ta.5106.3.S1_a_at CA690515 - - 4e+0 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) O.I. H.G. S.X.
0.14 15.8 0.93 TaAffx.12310.1.S1_at CA686952 - - 1e+0 At4g29930 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.13 14.6 0.96 Ta.3564.2.S1_at CA695960 - - 7e-2 At5g51310 gibberellin 20-oxidase-related O.I. H.G. S.X.
0.10 11.3 0.96 Ta.6595.1.S1_at CA680476 - - 2e+0 At5g23035 - O.I. H.G. S.X.
0.09 10.4 0.94 TaAffx.50222.1.S1_at CA744251 - - 8e-1 At1g35333 unknown protein O.I. H.G. S.X.
0.06 7.6 0.94 TaAffx.112042.1.S1_at CA687270 - - 1e-3 At3g10405 unknown protein O.I. H.G. S.X.
0.05 6.7 0.94 Ta.28364.1.S1_at AY543630.1 plasma membrane H+-ATPase - 1e-97 At4g30190 AHA2 O.I. H.G. S.X.
0.05 6.7 0.94 Ta.5439.1.S1_x_at CK200362 - - 2e-1 At3g59980 tRNA-binding region domain-containing protein O.I. H.G. S.X.
0.05 6.7 0.96 Ta.5439.1.S1_a_at CK200362 - - 2e-1 At3g59980 tRNA-binding region domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.5 98.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4 97.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8 97.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.0 96.3 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.7 95.8 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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