Co-expression analysis

Gene ID Ta.25161.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g50375: CPI1 (CYCLOPROPYL ISOMERASE) (HF=1e+1)
Module size 6 genes
NF 0.68
%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.82Ta.25161.1.S1_atBQ578355--1e+1At5g50375CPI1 (CYCLOPROPYL ISOMERASE)O.I.H.G.S.X.
0.9198.20.82Ta.25161.1.S1_x_atBQ578355--1e+1At5g50375CPI1 (CYCLOPROPYL ISOMERASE)O.I.H.G.S.X.
0.8092.20.88Ta.14459.1.S1_x_atBJ218617--5e+0At2g21070FIO1 (FIONA1)O.I.H.G.S.X.
0.8092.20.91Ta.12529.1.S1_atCK211211--4e+0At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.8092.20.92Ta.12529.1.S1_x_atCK211211--4e+0At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.3040.90.82Ta.6445.2.S1_x_atCA594529--3e+0At4g01420CBL5 (CALCINEURIN B-LIKE PROTEIN 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.299.6GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
15.399.6GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
14.799.5GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
13.699.5GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
13.699.5GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
13.399.5GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.896.0GSM111230genotype B33 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.795.8GSM138192genotype B33 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.294.8GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614133_at, orthologous to the query gene, Ta.25161.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6183.21614133_atAt5g50375hypothetical protein LOC100255873-5e-2At1g43800acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.8093.61607078_atAt5g50375hypothetical protein LOC100267148-2e-2At3g14670unknown proteinO.I.H.G.S.X.
0.7189.51622360_atAt5g50375hypothetical protein LOC100243086-5e-11At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.6787.91622131_atAt5g50375--9e-2At1g76520auxin efflux carrier family proteinO.I.H.G.S.X.
0.5980.61619850_atAt5g50375hypothetical protein LOC100256776-3e-48At2g05710aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeO.I.H.G.S.X.
0.4260.11611759_atAt5g50375hypothetical protein LOC100258468-4e-13At1g60440ATPANK1 (PANTOTHENATE KINASE 1)O.I.H.G.S.X.
0.4260.11618703_atAt5g50375hypothetical protein LOC100249546-6e-2At2g47350PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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