Co-expression analysis

Gene ID	Ta.25161.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g50375: CPI1 (CYCLOPROPYL ISOMERASE) (HF=1e+1)
Module size	6 genes
NF	0.68
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.82	Ta.25161.1.S1_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.82	Ta.25161.1.S1_x_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.88	Ta.14459.1.S1_x_at	BJ218617	-	-	5e+0	At2g21070	FIO1 (FIONA1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.12529.1.S1_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	Ta.12529.1.S1_x_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.82	Ta.6445.2.S1_x_at	CA594529	-	-	3e+0	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.6	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
15.3	99.6	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
14.7	99.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
13.3	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM111230	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM138192	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1614133_at, orthologous to the query gene, Ta.25161.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	1614133_at	At5g50375	hypothetical protein LOC100255873	-	5e-2	At1g43800	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	1607078_at	At5g50375	hypothetical protein LOC100267148	-	2e-2	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	1622360_at	At5g50375	hypothetical protein LOC100243086	-	5e-11	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1622131_at	At5g50375	-	-	9e-2	At1g76520	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1619850_at	At5g50375	hypothetical protein LOC100256776	-	3e-48	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	1611759_at	At5g50375	hypothetical protein LOC100258468	-	4e-13	At1g60440	ATPANK1 (PANTOTHENATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1618703_at	At5g50375	hypothetical protein LOC100249546	-	6e-2	At2g47350	PAPA-1-like family protein / zinc finger (HIT type) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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