CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.25142.3.S1_at

Gene name
Homology with Arabidopsis Similar to At5g65590: Dof-type zinc finger domain-containing protein (HF=2e-1)

Module size 16 genes

NF 0.32

%ile 52.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 0.86 Ta.25142.3.S1_at CA616288 - - 2e-1 At5g65590 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.47 67.9 0.90 TaAffx.84778.1.S1_at CA629387 - - 9e-1 At3g53610 ATRAB8 O.I. H.G. S.X.
0.44 64.5 0.95 TaAffx.65688.1.S1_x_at BJ232502 - - 2e+1 At3g02480 ABA-responsive protein-related O.I. H.G. S.X.
0.42 60.9 0.92 TaAffx.50779.1.S1_at CA735503 - - 3e+0 At5g55460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.40 58.4 0.94 TaAffx.78428.1.S1_at CA732797 - - 1e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.37 53.0 0.93 TaAffx.112386.1.S1_at CA624414 - - 3e-1 At2g25280 - O.I. H.G. S.X.
0.33 46.9 0.93 TaAffx.114123.1.S1_x_at CA598321 - - 4e-3 At2g46790 APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9) O.I. H.G. S.X.
0.33 46.9 0.94 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.33 46.9 0.96 TaAffx.78822.1.S1_at CA726823 - - 1e+0 At5g01075 beta-galactosidase O.I. H.G. S.X.
0.32 44.4 0.94 TaAffx.107438.1.S1_at CA699780 - - 1e-2 At3g26110 - O.I. H.G. S.X.
0.32 44.4 0.94 TaAffx.57555.1.S1_at CA618738 - - 2e+1 At5g67600 unknown protein O.I. H.G. S.X.
0.30 40.9 0.94 TaAffx.111311.1.S1_at CA643595 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.
0.26 33.6 0.94 TaAffx.31212.1.S1_at CA618488 - - 7e+0 At5g20820 auxin-responsive protein-related O.I. H.G. S.X.
0.23 29.0 0.94 TaAffx.82721.1.S1_at CA668034 - - 3e+1 At4g20780 calcium-binding protein, putative O.I. H.G. S.X.
0.22 27.1 0.94 Ta.5807.2.S1_at BJ290044 - - 3e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.14 15.8 0.93 Ta.16201.1.S1_at CA602442 - - 3e+0 At5g57535 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.8 99.1 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.2 99.0 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7 98.9 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.1 98.5 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
6.9 98.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.9 97.3 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.9 97.3 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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