Co-expression analysis

Gene ID Ta.25140.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g06390: integral membrane family protein (HF=1e-1)
Module size 31 genes
NF 0.76
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.40.82Ta.25140.1.S1_atCD866293--1e-1At3g06390integral membrane family proteinO.I.H.G.S.X.
0.8694.10.88TaAffx.31873.1.A1_atCA639072--2e+1At5g42980ATTRX3 (THIOREDOXIN 3)O.I.H.G.S.X.
0.8593.80.91Ta.7978.1.A1_atCK165602--5e+0At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.8593.80.92Ta.26335.2.S1_atCD490745--6e+0At5g26170WRKY50O.I.H.G.S.X.
0.8493.60.92Ta.7844.1.A1_atBQ160787--7e-1At1g54230DNA bindingO.I.H.G.S.X.
0.8192.40.91TaAffx.113792.1.S1_s_atCA608875--4e+0At1g77400-O.I.H.G.S.X.
0.8192.40.90Ta.25574.1.S1_x_atCD490451--9e+0At3g01940unknown proteinO.I.H.G.S.X.
0.8092.20.89TaAffx.58879.1.S1_atCA613610--3e+0At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.8092.20.93Ta.18832.1.S1_atBQ578752--1e+0At2g16210transcriptional factor B3 family proteinO.I.H.G.S.X.
0.7991.30.87Ta.29559.2.A1_atBJ286244--2e-1At2g20590reticulon family proteinO.I.H.G.S.X.
0.7991.30.87Ta.18497.1.S1_atCA638066--8e-1At5g16940carbon-sulfur lyaseO.I.H.G.S.X.
0.7891.10.91Ta.1643.1.S1_atCA606529--2e+0At3g05936unknown proteinO.I.H.G.S.X.
0.7690.10.91Ta.19132.1.S1_atCA647697--2e+0At3g09975unknown proteinO.I.H.G.S.X.
0.7690.10.89Ta.26335.1.S1_a_atCA611191--2e+0At3g21610-O.I.H.G.S.X.
0.7690.10.90Ta.20922.2.S1_a_atCA645487--1e+0At3g25650ASK15 (ARABIDOPSIS SKP1-LIKE 15)O.I.H.G.S.X.
0.7489.40.90TaAffx.124515.1.A1_atCK216665--3e-1At2g36690oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.7489.40.92Ta.29437.1.S1_atBQ743562--6e+0At5g51140pseudouridine synthase family proteinO.I.H.G.S.X.
0.7389.10.94Ta.29803.1.A1_atCK215155--8e+0At4g20880ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)O.I.H.G.S.X.
0.7288.30.94TaAffx.86505.1.S1_atCA653720--2e+0At5g09530hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.7288.30.86Ta.9281.1.S1_x_atBQ162594--6e-1At3g09730unknown proteinO.I.H.G.S.X.
0.7188.00.95Ta.5492.1.S1_x_atBJ279097--8e+0At3g01940unknown proteinO.I.H.G.S.X.
0.7188.00.93TaAffx.128633.1.S1_x_atCK214670--6e+0At3g01940unknown proteinO.I.H.G.S.X.
0.7188.00.93TaAffx.111573.1.S1_atCK212467--2e+1At3g59460-O.I.H.G.S.X.
0.7188.00.89Ta.16915.1.S1_atCD864957--5e+0At4g33770inositol 1,3,4-trisphosphate 5/6-kinase family proteinO.I.H.G.S.X.
0.7188.00.92Ta.28104.1.S1_atCA615172--6e-3At1g77400-O.I.H.G.S.X.
0.6986.90.94Ta.5492.1.S1_atBJ279097--8e+0At3g01940unknown proteinO.I.H.G.S.X.
0.6886.50.90Ta.18832.2.S1_atCA606603--4e+0At4g19250kelch repeat-containing proteinO.I.H.G.S.X.
0.6583.90.93Ta.1028.1.S1_x_atBE442684--1e+0At5g45940atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)O.I.H.G.S.X.
0.6483.60.93TaAffx.111573.1.S1_x_atCK212467--2e+1At3g59460-O.I.H.G.S.X.
0.6383.10.87Ta.20922.2.S1_x_atCA645487--1e+0At3g25650ASK15 (ARABIDOPSIS SKP1-LIKE 15)O.I.H.G.S.X.
0.6383.10.93Ta.18357.1.S1_atCA635029--3e-2At2g46100unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.499.7GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
13.999.5GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
12.499.4GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.498.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
8.198.8GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
5.497.7GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.697.0GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
4.496.8GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
3.996.1GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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