Co-expression analysis

Gene ID	Ta.2514.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g47860: apolipoprotein D-related (HF=1e+0)
Module size	8 genes
NF	0.36
%ile	57.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	73.7	0.97	Ta.2514.1.S1_at	BQ162494	-	-	1e+0	At3g47860	apolipoprotein D-related	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.1602.1.S1_a_at	CA721317	-	-	2e+0	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.12532.1.S1_at	BQ166155	-	-	2e-8	At5g52580	RAB GTPase activator	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.6005.1.S1_x_at	CN012127	-	-	2e+1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.1602.2.S1_at	CA685259	-	-	3e+0	At2g24970	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	TaAffx.129161.1.S1_at	CK210255	Serine/threonine protein kinase 1	-	8e-22	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.11481.1.A1_at	BQ170184	-	-	4e-1	At3g59800	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	Ta.12565.1.S1_at	CK205701	-	-	2e-3	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.1	90.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.1	90.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
1.9	88.9	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
1.9	88.9	GSM143526	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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