Co-expression analysis

Gene ID	Ta.25139.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g17150: - (HF=7e+0)
Module size	25 genes
NF	0.32
%ile	52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.94	Ta.25139.1.S1_at	CA615602	-	-	7e+0	At5g17150	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.96	TaAffx.128616.1.S1_x_at	CD924685	-	-	1e-1	At3g16700	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.95	Ta.26199.1.S1_at	CD908886	-	-	3e+0	At2g13463	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.1569.2.S1_x_at	CA601989	-	-	2e+0	At2g03170	ASK14 (ARABIDOPSIS SKP1-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.96	Ta.25854.1.S1_at	CD453706	-	-	5e-15	At1g05940	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.9642.2.S1_a_at	CA662794	-	-	4e+0	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.13624.2.S1_x_at	CA647589	-	-	1e+0	At5g27430	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.6666.3.S1_x_at	CA720211	-	-	4e-3	At3g03180	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	Ta.13308.2.S1_a_at	CA646875	-	-	8e-11	At3g29090	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.95	TaAffx.83918.1.S1_at	CA648239	-	-	1e-9	At5g06180	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.6932.2.S1_s_at	CD492027	-	-	2e-17	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.6673.1.A1_a_at	BJ319533	-	-	2e-9	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.9124.3.S1_a_at	CA641207	-	-	2e+0	At4g21192	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.13635.2.S1_a_at	CA499433	-	-	1e-11	At1g55270	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.14532.1.S1_at	CD900916	-	-	4e-45	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.9486.1.S1_a_at	CA613597	-	-	4e-13	At2g18750	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	TaAffx.115727.1.S1_at	BJ314247	-	-	4e+0	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	TaAffx.30725.1.S1_s_at	CA622632	-	-	1e+0	At1g03170	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.10431.2.A1_x_at	BU808670	-	-	3e-8	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.21114.2.S1_at	BG604841	-	-	4e-47	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.96	Ta.8023.1.S1_at	CA640979	-	-	4e-3	At4g30360	ATCNGC17	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.13695.1.S1_at	BQ801473	-	-	1e-25	At5g54855	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.7011.2.S1_a_at	CA636224	-	-	1e-9	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.7422.3.S1_a_at	CA593775	-	-	6e-5	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	Ta.10431.1.S1_at	CD454717	-	-	2e-7	At2g02960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.6	92.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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