CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.24987.1.S1_at

Gene name Cytosolic malate dehydrogenase
Homology with Arabidopsis Similar to At5g43330: malate dehydrogenase, cytosolic, putative (HF=1e-64)

Module size 15 genes

NF 0.71

%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.98 Ta.24987.1.S1_at CK166034 Cytosolic malate dehydrogenase - 1e-64 At5g43330 malate dehydrogenase, cytosolic, putative O.I. H.G. S.X.
0.86 94.1 0.99 Ta.659.7.A1_x_at BJ306943 - - 1e-161 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.85 93.8 0.99 Ta.659.2.S1_x_at CN012989 Translation elongation factor 1 alpha-subunit - 0 At5g60390 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.81 92.4 0.98 Ta.2576.2.S1_at BJ321004 Elongation factor - 1e-97 At1g56070 LOS1 O.I. H.G. S.X.
0.81 92.4 0.99 Ta.659.4.S1_a_at CD878208 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.80 92.2 0.99 Ta.27117.6.S1_x_at BJ262049 - - 1e-12 At3g08520 60S ribosomal protein L41 (RPL41D) O.I. H.G. S.X.
0.79 91.3 0.99 Ta.659.6.S1_x_at BJ282457 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.77 90.8 0.99 Ta.27117.2.S1_a_at CD862365 - - 2e-15 At2g40205 60S ribosomal protein L41 (RPL41C) O.I. H.G. S.X.
0.75 89.8 0.99 Ta.659.3.S1_x_at CD878859 Translation elongation factor 1 alpha-subunit - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.69 86.9 0.99 Ta.659.1.S1_x_at BI751166 Translation elongation factor 1 alpha-subunit - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.65 83.9 0.99 Ta.659.1.S1_at BI751166 Translation elongation factor 1 alpha-subunit - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.
0.58 79.2 0.99 Ta.13509.2.S1_a_at BJ285087 - - 3e-24 At3g54560 HTA11 O.I. H.G. S.X.
0.55 76.8 0.99 TaAffx.115437.1.A1_s_at BG607902 - - 4e+0 At2g43540 unknown protein O.I. H.G. S.X.
0.55 76.8 0.99 Ta.1532.1.S1_a_at BJ231467 eukaryotic translation initiation factor 5A3 - 2e-6 At1g26630 FBR12 (FUMONISIN B1-RESISTANT12) O.I. H.G. S.X.
0.44 64.5 0.99 Ta.27713.1.A1_x_at CD879558 elongation factor-1 alpha - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.8 99.1 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development
9.1 99.0 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
8.7 98.9 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
8.4 98.9 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
8.3 98.8 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
7.6 98.7 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.3 95.0 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
2.9 94.0 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
2.7 93.3 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage