Co-expression analysis

Gene ID	Ta.2407.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g76080: CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD) (HF=3e-2)
Module size	25 genes
NF	0.49
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	0.95	Ta.2407.2.A1_at	CA623177	-	-	3e-2	At1g76080	CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.97	Ta.1989.1.S1_x_at	CA674427	-	-	7e-6	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.5227.1.S1_x_at	BE213258	-	-	2e-1	At4g23890	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.5227.1.S1_at	BE213258	-	-	2e-1	At4g23890	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.3788.1.A1_at	BJ253790	-	-	2e+0	At1g30473	metal ion binding	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.98	Ta.27646.1.S1_at	CK211847	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.97	Ta.1989.1.S1_a_at	CA674427	-	-	7e-6	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.97	TaAffx.120874.1.S1_x_at	BM136337	-	-	4e-3	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.98	Ta.20639.3.S1_x_at	CA635230	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.98	Ta.20639.3.S1_a_at	CA635230	-	-	8e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.97	Ta.10166.1.A1_at	CA598364	-	-	1e-26	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.97	Ta.23120.1.S1_at	CK211553	-	-	3e+0	At4g04640	ATPC1	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.27646.1.S1_x_at	CK211847	-	-	7e-10	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.97	Ta.27761.2.S1_x_at	CK211226	-	-	5e-3	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.98	Ta.23158.1.S1_at	X51608.1	phosphoribulokinase	-	4e-40	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.96	Ta.9378.1.S1_at	CD875267	-	-	3e+0	At3g50790	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.2406.1.S1_a_at	BG907004	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.2406.3.S1_x_at	BG313971	-	-	5e-3	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.20639.2.A1_x_at	BQ620062	-	-	3e-7	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.30795.1.S1_at	BG905417	-	-	6e-139	At4g33010	AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.20429.2.S1_at	BE430528	-	-	1e-21	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	Ta.881.1.S1_at	CK213344	-	-	9e+0	At4g24974	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.20639.1.S1_x_at	CA675788	-	-	9e-6	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.2742.2.S1_a_at	CA619164	-	-	7e+0	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.2406.1.S1_x_at	BG907004	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.0	94.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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