Co-expression analysis

Gene ID	Ta.2406.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g38660: APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (HF=7e-7)
Module size	6 genes
NF	0.77
%ile	96.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.99	Ta.2406.1.S1_a_at	BG907004	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.99	Ta.2406.1.S1_x_at	BG907004	-	-	7e-7	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Ta.2406.3.S1_x_at	BG313971	-	-	5e-3	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.99	Ta.2742.2.S1_a_at	CA619164	-	-	7e+0	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.99	Ta.1978.1.S1_a_at	BJ251994	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.1117.1.S1_at	CD891659	-	-	1e-27	At1g23310	GGT1 (GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.5	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.3	98.2	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.0	96.3	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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