Co-expression analysis

Gene ID	Ta.2392.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g07450: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e+0)
Module size	6 genes
NF	0.70
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.97	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.581.1.S1_at	AY123417.1	hypothetical LOC543355	-	1e-7	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.581.2.S1_a_at	CD862705	hypothetical LOC543355	-	9e-3	At2g35370	GDCH	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.97	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.96	Ta.4255.2.S1_x_at	CA627750	-	-	4e-3	At1g75690	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.3581.3.S1_x_at	CA598998	-	-	4e-7	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.1	99.8	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
18.3	99.7	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
16.8	99.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298055	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL77Contig2_at, orthologous to the query gene, Ta.2392.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	PsAffx.CL77Contig2_at	At3g07450	-	-	3e+0	At3g32160	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL1799Contig1_at	At3g07450	-	-	1e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C78000053_at	At3g07450	-	-	3e+0	At2g46650	CB5-C (CYTOCHROME B5 ISOFORM C)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.C140000020_s_at	At3g07450	-	-	7e+0	At3g27270	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	PsAffx.C152000044_at	At3g07450	-	-	1e-2	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.C44000060_at	At3g07450	-	-	7e-1	At1g14510	AL7 (ALFIN-LIKE 7)	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.CL2440Contig1_at	At3g07450	-	-	1e+0	At5g54165	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	PsAffx.CL1719Contig1_at	At3g07450	-	-	7e+0	At5g25640	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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