Co-expression analysis

Gene ID	Ta.23908.2.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At4g20290: unknown protein (HF=1e+0)
Module size	41 genes
NF	0.15
%ile	28.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.91	Ta.23908.2.S1_s_at	CK157716	-	-	1e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	Ta.6003.2.A1_a_at	BJ294027	-	-	3e-1	At1g51030	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.1633.1.S1_a_at	BJ274459	-	-	3e-9	At5g53800	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.15850.1.S1_at	CA498584	-	-	5e-1	At4g37470	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.9782.3.S1_at	CA647168	-	-	4e+0	At2g27930	binding	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.25336.1.A1_at	CD454265	-	-	1e-7	At5g66030	ATGRIP	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.4712.1.A1_at	BJ275534	-	-	8e+0	At4g10450	60S ribosomal protein L9 (RPL90D)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.27926.1.A1_at	BJ309394	-	-	7e+0	At5g15290	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.8478.2.A1_a_at	CK169696	-	-	5e+0	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.93	Ta.23443.1.S1_s_at	BJ207561	-	-	2e+1	At5g66580	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	TaAffx.91987.1.S1_at	BJ294116	-	-	7e-9	At5g67530	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.3955.1.A1_at	BJ255753	-	-	1e+0	At5g17560	BolA-like family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.4661.1.S1_at	BG314545	-	-	2e-27	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	TaAffx.12454.2.S1_s_at	CA614965	-	-	4e+0	At1g68070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.5855.2.S1_x_at	AY230398.1	FCA-A1	-	1e-16	At4g16280	FCA	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.98	Ta.9802.1.A1_at	BJ232036	-	-	1e+0	At1g23050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.97	TaAffx.11974.1.S1_at	CD939781	-	-	4e-1	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.5122.2.S1_a_at	CA612372	-	-	2e-1	At1g77410	BGAL16 (beta-galactosidase 16)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.97	Ta.324.2.S1_x_at	BQ238537	-	-	2e-2	At3g50670	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.7128.1.S1_at	BQ802073	-	-	6e-8	At5g60160	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.9111.1.S1_at	BG908450	-	-	4e+0	At5g02360	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.96	Ta.6164.1.S1_at	BJ215034	-	-	1e-1	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.7490.1.S1_at	CD908413	-	-	4e-8	At2g38130	ATMAK3	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.14439.2.S1_a_at	CA644783	-	-	1e+0	At2g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.14255.1.S1_at	BJ285435	-	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.5804.1.S1_at	CK197990	-	-	2e-1	At5g34869	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.97	Ta.25604.1.S1_at	CD454134	-	-	8e-16	At1g32490	ESP3 (ENHANCED SILENCING PHENOTYPE 3)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.14055.1.S1_at	CK207657	-	-	1e-1	At1g64385	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.9461.2.A1_a_at	BJ323150	-	-	1e-6	At5g14420	RGLG2 (RING domain Ligase2)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.97	TaAffx.11835.1.A1_at	BJ321178	-	-	3e-1	At4g26940	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.96	Ta.617.1.S1_s_at	BJ287822	-	-	2e-19	At1g20575	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.95	Ta.5876.1.S1_at	CK196203	-	-	2e-16	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	Ta.3718.2.S1_at	CD895847	-	-	4e-52	At2g26140	ftsh4 (FtsH protease 4)	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.95	Ta.15957.1.S1_a_at	CA502371	-	-	5e+0	At3g27835	-	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.95	Ta.2245.1.A1_at	BJ321534	-	-	2e+0	At5g07410	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.96	Ta.9829.1.A1_x_at	BJ232701	-	-	3e-1	At2g22122	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.96	Ta.23145.1.S1_s_at	BJ262993	-	-	3e+0	At4g27760	FEY (FOREVER YOUNG)	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.96	Ta.7677.2.S1_a_at	CK194307	-	-	2e+1	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.4687.1.S1_at	BJ275067	-	-	4e-5	At5g16880	VHS domain-containing protein / GAT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.96	Ta.6467.1.S1_x_at	CK194906	-	-	1e-35	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.93	TaAffx.129073.2.S1_s_at	BJ322588	-	-	3e-1	At4g23770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.7	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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