Co-expression analysis

Gene ID	Ta.23826.1.S1_at
Gene name	Histone deacetylase HDAC3
Homology with Arabidopsis	Similar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (HF=3e-41)
Module size	6 genes
NF	0.51
%ile	77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.23826.1.S1_at	BT009381.1	Histone deacetylase HDAC3	-	3e-41	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.21771.1.S1_at	CK205788	-	-	3e-18	At5g20580	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	TaAffx.55474.1.S1_at	BJ272980	-	-	2e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.9783.3.S1_x_at	BJ285979	-	-	4e+0	At2g21465	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.10521.1.S1_s_at	CA706488	-	-	3e-13	At4g11740	SAY1	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.98	TaAffx.61230.1.S1_at	CK208449	-	-	8e-5	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.8	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.9	96.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6	95.6	GSM143511	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.4	95.2	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.3	95.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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