Co-expression analysis

Gene ID	Ta.23822.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g36026: - (HF=6e-2)
Module size	6 genes
NF	0.92
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.96	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.95	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.96	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.97	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.3380.1.S1_at	AB042629.1	-	-	2e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.23042.1.S1_x_at	BE517350	-	-	1e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.8	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
22.6	99.8	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
19.7	99.7	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
12.4	99.4	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.19128.1.S1_at, orthologous to the query gene, Ta.23822.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.19128.1.S1_at	At2g36026	hypothetical protein	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.207591.1.S1_x_at	At2g36026	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.207593.1.S1_at	At2g36026	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.207593.1.S1_x_at	At2g36026	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.21524.1.S1_at	At2g36026	hypothetical protein	-	1e-1	At2g03600	ATUPS3 (Arabidopsis thaliana ureide permease 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.156807.1.S1_at	At2g36026	hypothetical protein	-	1e+0	At3g12955	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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