CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.23663.1.A1_at

Gene name heat shock protein 16.9
Homology with Arabidopsis Similar to At1g07400: 17.8 kDa class I heat shock protein (HSP17.8-CI) (HF=2e-9)

Module size 6 genes

NF 0.01

%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.84 Ta.23663.1.A1_at CD915829 heat shock protein 16.9 - 2e-9 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) O.I. H.G. S.X.
0.06 7.6 0.92 TaAffx.30652.1.S1_at CA623146 - - 3e-4 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.72723.1.S1_s_at BE427906 - - 7e+0 At5g56170 - O.I. H.G. S.X.
0.02 3.6 0.92 Ta.20317.1.S1_x_at CA678146 - - 4e+0 At5g59850 40S ribosomal protein S15A (RPS15aF) O.I. H.G. S.X.
- 0.7 0.92 Ta.6591.3.S1_x_at CA646755 - - 1e+0 At1g73910 ATARP4A (Actin-related proteins 4A) O.I. H.G. S.X.
- 0.7 0.93 Ta.6052.2.S1_a_at CA661259 - - 3e-8 At3g27740 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.4 99.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
11.6 99.3 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
11.5 99.3 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.6 99.1 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.4 98.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1 98.5 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6 97.8 GSM143519 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5 97.8 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the maize gene, Zm.2482.1.A1_at, orthologous to the query gene, Ta.23663.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.96 99.8 Zm.2482.1.A1_at At1g07400 16.9 kDa class I heat shock protein 1 - 1e-4 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.44 55.7 Zm.16775.1.A1_at At1g07400 hypothetical protein LOC100274644 - 7e-3 At5g49970 ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) O.I. H.G. S.X.
0.39 45.6 ZmAffx.107.1.A1_at At1g07400 hypothetical protein LOC100275548 - 8e-1 At4g19095 unknown protein O.I. H.G. S.X.
0.32 33.4 ZmAffx.930.1.A1_at At1g07400 - - 9e+0 Atmg01210 - O.I. H.G. S.X.
0.26 22.7 Zm.5087.1.A1_at At1g07400 - - 3e-1 At5g37478 - O.I. H.G. S.X.
0.24 19.8 Zm.13869.1.A1_x_at At1g07400 R2R3MYB-domain protein - 4e+0 At2g04910 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.24 19.8 ZmAffx.1089.1.A1_at At1g07400 hydrolase - 3e+0 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) O.I. H.G. S.X.
0.24 19.8 Zm.13307.1.S1_at At1g07400 - - 1e+0 At1g10200 WLIM1 O.I. H.G. S.X.
0.22 16.9 Zm.6085.2.A1_a_at At1g07400 hypothetical protein LOC100280198 - 1e+1 At5g53820 unknown protein O.I. H.G. S.X.
0.21 15.5 ZmAffx.491.1.S1_at At1g07400 - - 9e+0 At5g11412 nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.19 12.8 - - - - - - O.I. H.G. S.X.
0.16 9.4 Zm.13984.1.A1_at At1g07400 phytosulfokine peptide precursor1 - 1e+0 At5g27860 unknown protein O.I. H.G. S.X.
0.15 8.6 ZmAffx.1103.1.A1_at At1g07400 - - 1e+1 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) O.I. H.G. S.X.
0.10 4.6 Zm.17928.1.A1_at At1g07400 hypothetical protein LOC100217238 - 4e+0 At5g09660 PMDH2 (peroxisomal NAD-malate dehydrogenase 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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