CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.23663.1.A1_at

Gene name heat shock protein 16.9
Homology with Arabidopsis Similar to At1g07400: 17.8 kDa class I heat shock protein (HSP17.8-CI) (HF=2e-9)

Module size 6 genes

NF 0.01

%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.84 Ta.23663.1.A1_at CD915829 heat shock protein 16.9 - 2e-9 At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI) O.I. H.G. S.X.
0.06 7.6 0.92 TaAffx.30652.1.S1_at CA623146 - - 3e-4 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) O.I. H.G. S.X.
0.04 5.8 0.92 TaAffx.72723.1.S1_s_at BE427906 - - 7e+0 At5g56170 - O.I. H.G. S.X.
0.02 3.6 0.92 Ta.20317.1.S1_x_at CA678146 - - 4e+0 At5g59850 40S ribosomal protein S15A (RPS15aF) O.I. H.G. S.X.
- 0.7 0.92 Ta.6591.3.S1_x_at CA646755 - - 1e+0 At1g73910 ATARP4A (Actin-related proteins 4A) O.I. H.G. S.X.
- 0.7 0.93 Ta.6052.2.S1_a_at CA661259 - - 3e-8 At3g27740 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.4 99.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
11.6 99.3 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
11.5 99.3 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.6 99.1 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.4 98.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1 98.5 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6 97.8 GSM143519 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5 97.8 GSM250894 TcLr34_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
4.1 96.4 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1612385_at, orthologous to the query gene, Ta.23663.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1612385_at At1g07400 hypothetical protein LOC100244376 - 5e-16 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) O.I. H.G. S.X.
0.91 98.8 1621902_at At1g07400 hypothetical protein LOC100255485 - 4e-26 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) O.I. H.G. S.X.
0.80 93.6 1609808_at At1g07400 hypothetical protein LOC100250305 - 8e-14 At1g56600 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) O.I. H.G. S.X.
0.67 87.9 1616538_at At1g07400 hypothetical protein LOC100263791 - 2e+0 At2g15327 unknown protein O.I. H.G. S.X.
0.50 72.7 1618066_a_at At1g07400 hypothetical protein LOC100257736 - 2e-65 At5g52640 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) O.I. H.G. S.X.
0.46 66.5 1618943_at At1g07400 - - 4e-1 At3g03010 aminoacyl-tRNA hydrolase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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