Co-expression analysis

Gene ID	Ta.23411.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g60750: transketolase, putative (HF=3e-57)
Module size	19 genes
NF	0.71
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.96	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.88	94.4	0.98	Ta.27751.2.S1_x_at	CK214731	-	-	4e-27	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.97	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.98	Ta.27751.6.S1_at	BJ286005	-	-	1e-28	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.86	94.1	0.98	Ta.1969.1.S1_a_at	BE216986	-	-	5e-7	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.82	92.7	0.98	Ta.1130.1.S1_a_at	BG907492	-	-	2e-7	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.97	Ta.28361.2.S1_at	CK216267	-	-	8e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.28361.2.S1_x_at	CK216267	-	-	8e+0	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.98	Ta.506.1.S1_a_at	BJ265323	-	-	6e-48	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.97	Ta.30727.1.S1_at	CD873777	-	-	1e-39	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.97	Ta.1130.2.S1_x_at	CK212780	-	-	5e-26	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.97	Ta.2307.1.S1_at	X15233.1	phosphoglycerate kinase	-	1e-92	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select
0.68	86.5	0.98	Ta.1130.3.S1_x_at	AJ613398	-	-	3e-33	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.1161.1.S1_at	BJ261576	-	-	4e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.99	Ta.22831.1.S1_at	CK211942	membrane protein-like	-	9e-12	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.98	Ta.22831.1.S1_x_at	CK211942	membrane protein-like	-	9e-12	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.99	Ta.27793.2.S1_x_at	CK218048	Photosystem II polypeptide	-	1e-1	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	Ta.28265.1.S1_at	CK213341	oxygen-evolving complex precursor	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.506.2.A1_at	CD936393	-	-	2e-31	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.6	99.7	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.3	98.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9	96.1	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0	94.3	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.2	91.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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