CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.23181.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g73950: zinc finger (C3HC4-type RING finger) family protein (HF=2e-4)

Module size 15 genes

NF 0.11

%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.6 0.96 Ta.23181.1.S1_at CK153402 - - 2e-4 At1g73950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 46.9 0.97 TaAffx.37845.1.A1_at BJ262517 - - 7e-1 At1g07960 ATPDIL5-1 (PDI-like 5-1) O.I. H.G. S.X.
0.23 29.0 0.95 Ta.14790.1.S1_at CA682111 - - 9e+0 At4g21110 G10 family protein O.I. H.G. S.X.
0.16 18.2 0.97 Ta.2863.1.S1_s_at CK210585 - - 2e-8 At2g21510 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.15 17.1 0.97 Ta.9637.1.S1_at BJ273485 - - 5e-1 At3g53490 unknown protein O.I. H.G. S.X.
0.14 15.8 0.97 Ta.5152.1.A1_s_at BJ277593 - - 5e+0 At1g16705 p300/CBP acetyltransferase-related protein-related O.I. H.G. S.X.
0.13 14.6 0.98 Ta.7089.1.S1_at CD872336 casein kinase-like protein - 2e-13 At3g13670 protein kinase family protein O.I. H.G. S.X.
0.13 14.6 0.97 TaAffx.12820.1.A1_at BJ230818 - - 4e+0 At5g42630 ATS (ABERRANT TESTA SHAPE) O.I. H.G. S.X.
0.13 14.6 0.97 Ta.2514.1.S1_at BQ162494 - - 1e+0 At3g47860 apolipoprotein D-related O.I. H.G. S.X.
0.10 11.3 0.97 Ta.9387.1.S1_at BJ251341 - - 9e-23 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.09 10.4 0.97 Ta.4993.1.A1_at BQ168542 - - 3e+0 At1g49950 DNA-binding protein, putative O.I. H.G. S.X.
0.08 9.4 0.96 Ta.9326.1.S1_x_at CA705658 - - 4e-2 At3g47300 SELT (SELT-LIKE PROTEIN PRECURSOR) O.I. H.G. S.X.
0.07 8.6 0.97 Ta.3375.1.S1_at BQ237107 - - 4e-15 At1g79230 MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) O.I. H.G. S.X.
0.06 7.6 0.97 TaAffx.15031.1.A1_at AJ615902 - - 5e-6 At1g11020 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.05 6.7 0.96 Ta.18382.1.S1_at CD452872 - - 8e-1 At2g30460 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.5 98.9 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.1 98.8 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.4 98.6 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.4 97.7 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.2 97.5 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7 97.1 GSM343686 Wheat var. Kennedy_Fp inoculated_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.4 92.0 GSM298085 Crown tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.3 91.5 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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