Co-expression analysis

Gene ID	Ta.23107.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g46060: ATRAB8A (HF=1e-28)
Module size	10 genes
NF	0.47
%ile	73.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	67.9	0.98	Ta.23107.3.S1_x_at	CA655366	-	-	1e-28	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.3309.1.S1_s_at	CA602533	-	-	3e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.9617.1.S1_at	CD871450	-	-	8e-50	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.1077.1.S1_x_at	CA700934	-	-	2e+0	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.22949.1.S1_a_at	CA656313	-	-	3e-1	At3g17220	PMEI2	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.99	Ta.3309.3.S1_x_at	BE443725	-	-	2e-11	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.9176.1.S1_at	BJ218541	-	-	7e-47	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.24991.1.S1_x_at	CK214927	cytosolic glyceraldehyde-3-phosphate dehydrogenase GAPDH	-	4e-120	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.99	Ta.13823.1.S1_a_at	CK152063	-	-	7e+0	At4g18500	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.2612.2.S1_x_at	BU100759	-	-	2e-3	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.2	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.3	97.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.2	91.0	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
1.9	88.9	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
1.8	88.1	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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