Co-expression analysis

Gene ID	Ta.23107.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g53610: ATRAB8 (HF=1e-51)
Module size	6 genes
NF	0.64
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	0.98	Ta.23107.1.S1_a_at	CK156982	-	-	1e-51	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.99	Ta.12803.1.S1_x_at	CA674406	-	-	3e-5	At2g47380	cytochrome c oxidase subunit Vc family protein / COX5C family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.99	Ta.24916.3.S1_x_at	CA630515	-	-	8e-2	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.99	Ta.24916.2.S1_x_at	CK164288	-	-	4e-4	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.99	Ta.24916.2.S1_at	CK164288	-	-	4e-4	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.99	Ta.27578.1.S1_at	CN013235	-	-	1e-43	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.4	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111249	genotype F87 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9	94.0	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM138170	genotype C31 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM111248	genotype F87 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.7	93.3	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM138187	genotype F38b developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM138194	genotype J15 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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