Co-expression analysis

Gene ID	Ta.2308.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g59140: SKP1 family protein (HF=4e-3)
Module size	20 genes
NF	0.41
%ile	66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.5	0.96	Ta.2308.3.S1_x_at	CA683060	-	-	4e-3	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	Ta.2305.2.S1_x_at	CD909723	-	-	5e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.11141.3.S1_x_at	BQ238199	-	-	3e-54	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.97	Ta.28727.1.A1_x_at	CA722823	-	-	7e-2	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.30793.2.S1_x_at	CA648966	-	-	3e-5	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.3311.1.S1_at	BJ274103	root hair defective 3 GTP-binding protein	-	1e-28	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.97	Ta.2505.1.A1_at	BJ261362	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.2505.1.A1_x_at	BJ261362	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	Ta.30793.1.S1_x_at	CK212652	-	-	1e-4	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.28673.1.S1_at	BJ286336	Vacuolar ATPase subunit F	-	3e-15	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.2528.1.S1_at	CD919475	-	-	3e-3	At4g15470	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.14353.1.S1_at	BU100478	-	-	5e-4	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.23895.1.S1_x_at	CK205337	-	-	3e-55	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.8309.2.S1_a_at	BJ308128	-	-	2e-2	At2g36680	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	TaAffx.22501.1.S1_at	CN009170	-	-	4e-14	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.829.1.S1_at	BJ283440	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.2308.1.S1_x_at	BJ297332	-	-	1e-7	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.11141.2.S1_s_at	CD879301	-	-	2e-99	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	AFFX-Tae-r2-Ec-bioB-3_at	AFFX-Tae-r2-Ec-bioB-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	AFFX-Tae-r2-Bs-thr-5_s_at	AFFX-Tae-r2-Bs-thr-5	-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.9	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM111241	genotype F82 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM111243	genotype C10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.2	91.0	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
2.0	89.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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