Co-expression analysis

Gene ID	Ta.23042.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g54160: ATOMT1 (O-METHYLTRANSFERASE 1) (HF=1e-2)
Module size	6 genes
NF	0.86
%ile	98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.95	Ta.23042.1.S1_x_at	BE517350	-	-	1e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.95	Ta.3382.1.S1_at	AB042627.1	-	-	4e+0	At3g21460	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.23822.1.S1_at	AF123603.1	-	-	6e-2	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Ta.1362.1.S1_at	AB042631.1	-	-	1e-2	At5g25130	CYP71B12	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.3381.1.S1_at	AF123602.1	-	-	9e-1	At4g31940	CYP82C4	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.91	Ta.23042.2.S1_at	CK214164	-	-	5e+0	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.0	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
31.8	99.9	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
25.6	99.8	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
25.3	99.8	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
22.2	99.8	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
22.2	99.8	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314264	tissue type: seedling, crown - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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