CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.22913.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g61200: - (HF=1e+1)

Module size 6 genes

NF 0.44

%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.0 0.98 Ta.22913.1.S1_at CA715053 - - 1e+1 At5g61200 - O.I. H.G. S.X.
0.55 76.8 0.98 Ta.14547.1.S1_at BJ317926 - - 6e-4 At1g26665 - O.I. H.G. S.X.
0.55 76.8 0.98 Ta.3308.1.S1_at BJ262335 - - 8e-31 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.53 74.9 0.98 Ta.829.1.S1_at BJ283440 - - 2e-47 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) O.I. H.G. S.X.
0.50 72.4 0.98 Ta.7176.1.S1_at CD490871 - - 2e+0 At5g05690 CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF) O.I. H.G. S.X.
0.23 29.0 0.98 Ta.14353.1.S1_at BU100478 - - 5e-4 At5g52200 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.8 97.9 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
4.1 96.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
2.9 94.0 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7 93.3 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.6 92.9 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.214920.1.S1_s_at, orthologous to the query gene, Ta.22913.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 97.4 PtpAffx.214920.1.S1_s_at At5g61200 cc-nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein - 2e+0 At5g42530 unknown protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.35403.1.S1_at At5g61200 - - 6e+0 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast O.I. H.G. S.X.
0.06 9.8 PtpAffx.221753.1.S1_at At5g61200 hypothetical protein - 7e-77 At2g07715 ribosomal protein L2, putative O.I. H.G. S.X.
0.04 6.9 PtpAffx.87578.1.S1_at At5g61200 hypothetical protein - 5e-3 At5g56340 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.03 5.2 PtpAffx.221641.1.S1_at At5g61200 hypothetical protein - 2e-16 At5g46070 GTP binding / GTPase O.I. H.G. S.X.
0.03 5.2 PtpAffx.124466.1.S1_at At5g61200 hypothetical protein - 1e-1 At5g28040 transcription regulator O.I. H.G. S.X.
0.03 5.2 PtpAffx.67551.1.S1_at At5g61200 hypothetical protein - 3e-69 At5g65010 ASN2 (ASPARAGINE SYNTHETASE 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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