Co-expression analysis

Gene ID Ta.22913.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g61200: - (HF=1e+1)
Module size 6 genes
NF 0.44
%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.00.98Ta.22913.1.S1_atCA715053--1e+1At5g61200-O.I.H.G.S.X.
0.5576.80.98Ta.14547.1.S1_atBJ317926--6e-4At1g26665-O.I.H.G.S.X.
0.5576.80.98Ta.3308.1.S1_atBJ262335--8e-31At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.5374.90.98Ta.829.1.S1_atBJ283440--2e-47At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.5072.40.98Ta.7176.1.S1_atCD490871--2e+0At5g05690CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)O.I.H.G.S.X.
0.2329.00.98Ta.14353.1.S1_atBU100478--5e-4At5g52200unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.196.4GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.096.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.793.3GSM298059Crown tissue of Harnesk at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.692.9GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0334400, orthologous to the query gene, Ta.22913.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os06g0334400At5g61200-Cdk-activating kinase 1At (Cdk-activating kinaseCAK1At)3e+0At5g19430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4051.1Os04g0440000At5g61200-Conserved hypothetical protein3e-6At1g55928unknown proteinO.I.H.G.S.X.
0.3541.7Os02g0305700At5g61200-ARM repeat fold domain containing protein5e-2At3g01450bindingO.I.H.G.S.X.
0.3541.7Os05g0357800At5g61200-Phospholipid/glycerol acyltransferase familyprotein2e-4At1g80950phospholipid/glycerol acyltransferase family proteinO.I.H.G.S.X.
0.3338.8Os01g0507500At5g61200-Conserved hypothetical protein2e-1At1g71080unknown proteinO.I.H.G.S.X.
0.3134.5Os06g0711600At5g61200-Conserved hypothetical protein8e-10At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.2931.1Os10g0564800At5g61200-Calcium-binding EF-hand domain containing protein7e-6At5g47100CBL9O.I.H.G.S.X.
0.2727.5Os03g0268000At5g61200-Protein phosphatase 1, catalytic gsmms subunit9e-38At5g59160TOPP2O.I.H.G.S.X.
0.2321.2Os07g0618600At5g61200-Zn-finger, FYVE type domain containing protein3e+0At2g26210ankyrin repeat family proteinO.I.H.G.S.X.
0.1813.7Os08g0127700At5g61200-Conserved hypothetical protein2e-48At4g37120SMP2O.I.H.G.S.X.
0.1611.3Os01g0813900At5g61200-ZIGA1 protein (Fragment)7e-6At1g08680ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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