Co-expression analysis

Gene ID Ta.2282.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07850: exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (HF=4e+0)
Module size 8 genes
NF 0.18
%ile 31.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.30.96Ta.2282.3.S1_atCA651230--4e+0At3g07850exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinaseO.I.H.G.S.X.
0.3854.70.97Ta.2282.2.S1_atBJ285454--3e-1At2g03330unknown proteinO.I.H.G.S.X.
0.3549.80.97TaAffx.2506.1.S1_atBJ231088--2e+0At3g53850-O.I.H.G.S.X.
0.1719.80.97Ta.5548.1.A1_atBJ308631--1e+0At4g39900unknown proteinO.I.H.G.S.X.
0.1517.10.97TaAffx.22421.1.S1_atBQ245262--2e-8At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.1415.80.97Ta.4722.3.A1_atCA605089--3e-1At3g48530KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)O.I.H.G.S.X.
0.1213.30.97Ta.2282.1.S1_x_atCA602264--2e-14At1g20760calcium-binding EF hand family proteinO.I.H.G.S.X.
0.0910.40.97Ta.2606.1.S1_atCK205962--6e-37At5g11490adaptin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.699.1GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.698.7GSM139933Anther mature anthers rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
7.598.6GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.798.4GSM139932Anther mature anthers rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
6.398.2GSM139931Anther maturea nthers rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.296.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.896.0GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.395.0GSM111230genotype B33 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.395.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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