Co-expression analysis

Gene ID	Ta.2278.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=6e+0)
Module size	6 genes
NF	0.71
%ile	93.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.82	Ta.2278.3.S1_x_at	CD490414	-	-	6e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.85	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.83	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.86	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.87	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.82	Ta.30921.1.S1_x_at	CN012317	-	-	2e-4	At1g09400	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
47.3	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
42.2	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
34.3	99.9	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
12.5	99.4	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the grape gene, 1616064_at, orthologous to the query gene, Ta.2278.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1616064_at	At3g12500	-	-	1e-4	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1612436_s_at	At3g12500	isoflavone reductase-like protein 3	-	1e+0	At5g20520	WAV2 (WAVY GROWTH 2)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1619263_at	At3g12500	-	-	2e+0	At2g03933	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	1616357_at	At3g12500	hypothetical protein LOC100255530	-	5e-16	At2g17220	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.04	5.2	1613586_at	At3g12500	hypothetical protein LOC100245607	-	2e-3	At4g20830	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1615595_at	At3g12500	class I beta-1,3-glucanase	-	3e-3	At4g16260	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.01	2.1	1618856_at	At3g12500	-	-	6e-46	At4g27450	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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