CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2278.3.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=6e+0)

Module size 6 genes

NF 0.71

%ile 93.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.82 Ta.2278.3.S1_x_at CD490414 - - 6e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.83 93.4 0.85 Ta.2278.2.S1_x_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.83 Ta.2278.1.S1_x_at CK199734 - - 3e+0 At2g43590 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.86 Ta.2278.2.S1_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.87 Ta.2278.2.S1_a_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.31 42.7 0.82 Ta.30921.1.S1_x_at CN012317 - - 2e-4 At1g09400 12-oxophytodienoate reductase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.3 99.9 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
42.2 99.9 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
34.3 99.9 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
12.5 99.4 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.8 98.7 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7 98.7 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
6.1 98.1 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.9 98.0 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os04g0494100, orthologous to the query gene, Ta.2278.3.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 Os04g0494100 At3g12500 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 1e-1 At2g43590 chitinase, putative O.I. H.G. S.X.
0.73 91.1 Os04g0493400 At3g12500 - Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) 4e-2 At3g54420 ATEP3 O.I. H.G. S.X.
0.73 91.1 Os01g0382400 At3g12500 - Pathogenesis-related protein PRB1-2 precursor 1e-1 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.61 81.2 Os03g0624300 At3g12500 - Hypothetical protein 1e+0 At5g43211 unknown protein O.I. H.G. S.X.
0.60 79.7 Os01g0944700 At3g12500 - Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII) 1e-2 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.
0.50 68.0 Os11g0592200 At3g12500 - Barwin domain containing protein 8e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.44 58.1 Os12g0630200 At3g12500 - Antifungal protein R (Fragment) 1e-1 At3g55880 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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