Co-expression analysis

Gene ID	Ta.2278.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g47540: chitinase, putative (HF=5e-2)
Module size	6 genes
NF	0.49
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.85	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.83	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.87	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.2278.3.S1_x_at	CD490414	-	-	6e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.84	Ta.3118.1.S1_at	BE515437	-	-	5e-4	At1g27140	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
47.3	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
42.3	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
34.4	99.9	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
12.6	99.4	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.8	98.9	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7	98.7	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8	97.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6	97.8	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the maize gene, Zm.1595.1.S1_at, orthologous to the query gene, Ta.2278.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.1595.1.S1_at	At3g47540	endochitinase A	-	6e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.83	95.6	Zm.1596.1.S1_at	At3g47540	-	-	9e-1	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.6822.2.S1_a_at	At3g47540	receptor expression-enhancing protein 3	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.5962.1.S1_at	At3g47540	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.13188.3.S1_x_at	At3g47540	hypothetical protein LOC100193240	-	8e-6	At2g37270	ATRPS5B (RIBOSOMAL PROTEIN 5B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.3350.2.A1_at	At3g47540	U6 snRNA-associated Sm-like protein LSm4	-	7e-34	At5g27720	emb1644 (embryo defective 1644)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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