CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2278.2.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g47540: chitinase, putative (HF=5e-2)

Module size 6 genes

NF 0.49

%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.85 Ta.2278.2.S1_x_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.83 Ta.2278.1.S1_x_at CK199734 - - 3e+0 At2g43590 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.87 Ta.2278.2.S1_a_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.91 Ta.2278.3.S1_x_at CD490414 - - 6e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.67 86.3 0.98 Ta.2278.2.S1_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.12 13.3 0.84 Ta.3118.1.S1_at BE515437 - - 5e-4 At1g27140 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.3 99.9 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
42.3 99.9 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
34.4 99.9 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
12.6 99.4 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.7 98.7 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7 98.7 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
6.0 98.0 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8 97.9 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6 97.8 GSM143504 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.2522.3.A1_at, orthologous to the query gene, Ta.2278.2.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 87.0 PtpAffx.2522.3.A1_at At3g47540 hypothetical protein - 6e-1 At3g18160 peroxin-3 family protein O.I. H.G. S.X.
0.46 73.7 PtpAffx.123111.1.A1_at At3g47540 - - 7e-1 At3g13432 unknown protein O.I. H.G. S.X.
0.33 57.5 PtpAffx.88299.1.A1_at At3g47540 - - 6e+0 At3g11810 unknown protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.217640.1.S1_at At3g47540 hypothetical protein - 8e-1 At3g04800 ATTIM23-3 O.I. H.G. S.X.
0.25 43.6 PtpAffx.71504.1.S1_a_at At3g47540 hypothetical protein - 4e-1 At5g25940 early nodulin-related O.I. H.G. S.X.
0.25 43.6 PtpAffx.36902.3.A1_at At3g47540 - - 1e-19 At3g22850 unknown protein O.I. H.G. S.X.
0.19 32.7 PtpAffx.24647.1.A1_at At3g47540 - - 9e-1 At5g21274 CAM6 (CALMODULIN 6) O.I. H.G. S.X.
0.08 12.9 Ptp.7102.1.A1_at At3g47540 hypothetical protein - 2e+0 At3g23180 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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