CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2278.2.S1_x_at

Gene name
Homology with Arabidopsis Similar to At3g47540: chitinase, putative (HF=5e-2)

Module size 6 genes

NF 0.49

%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.85 Ta.2278.2.S1_x_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.83 Ta.2278.1.S1_x_at CK199734 - - 3e+0 At2g43590 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.87 Ta.2278.2.S1_a_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.80 92.2 0.91 Ta.2278.3.S1_x_at CD490414 - - 6e+0 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.67 86.3 0.98 Ta.2278.2.S1_at CK196331 - - 5e-2 At3g47540 chitinase, putative O.I. H.G. S.X.
0.12 13.3 0.84 Ta.3118.1.S1_at BE515437 - - 5e-4 At1g27140 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.3 99.9 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
42.3 99.9 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
34.4 99.9 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
12.6 99.4 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
8.8 98.9 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
7.7 98.7 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.7 98.7 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
6.0 98.0 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8 97.9 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6 97.8 GSM143504 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g47540, orthologous to the query gene, Ta.2278.2.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.41 52.4 At3g47540 823908 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBMOF O.I. H.G. S.X.
0.43 55.3 At2g29470 817496 ATGSTU3 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 3) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.
0.34 39.8 At3g13950 820608 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. H.G. S.X.
0.32 35.7 At1g21525 3766777 - pseudogene of unknown protein O.I. H.G. S.X.
0.28 30.3 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM O.I. H.G. S.X.
0.26 24.4 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. H.G. S.X.
0.24 20.7 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. H.G. S.X.
0.22 17.5 At5g38900 833882 DSBA oxidoreductase family protein F:protein disulfide oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. H.G. S.X.
0.21 15.8 At3g26830 822298 PAD3 (PHYTOALEXIN DEFICIENT 3) Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. O.I. H.G. S.X.
0.18 11.4 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.
0.18 11.4 At2g04450 814985 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6) F:ADP-ribose diphosphatase activity, hydrolase activity, NAD or NADH binding;P:response to other organism;C:cytosol;OBMPAFV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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