Co-expression analysis

Gene ID	Ta.2278.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g43590: chitinase, putative (HF=3e+0)
Module size	8 genes
NF	0.61
%ile	86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.78	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.86	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.87	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.91	Ta.2278.3.S1_x_at	CD490414	-	-	6e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.86	Ta.962.1.A1_at	BQ160711	-	-	1e+0	At2g05510	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.86	TaAffx.27893.1.S1_x_at	CA668653	-	-	1e+1	At3g57160	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.89	Ta.21350.1.S1_x_at	L11882.1	Wali5 protein	-	6e+0	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
35.8	99.9	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
32.1	99.9	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
26.1	99.8	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
7.0	98.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
6.2	98.1	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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