Co-expression analysis

Gene ID	Ta.22743.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At4g12090: cornichon family protein (HF=7e+0)
Module size	6 genes
NF	0.73
%ile	94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.93	Ta.22743.1.S1_x_at	CA652933	-	-	7e+0	At4g12090	cornichon family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	Ta.7022.2.S1_at	BF199967	-	-	5e-1	At1g19320	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.93	TaAffx.33753.1.S1_at	CK162146	-	-	7e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.91	Ta.7022.1.S1_x_at	BJ281221	-	-	7e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.93	TaAffx.84007.1.S1_at	CA646483	-	-	1e+1	Atcg00560	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.33753.2.S1_s_at	BQ168712	-	-	2e+1	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.1	99.2	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.2	99.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM138178	genotype A88 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.5	98.6	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.3	98.6	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.9	98.4	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.3	98.2	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.3	98.2	GSM111250	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.2	97.5	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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