Co-expression analysis

Gene ID	Ta.2270.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g24480: zinc finger (C3HC4-type RING finger) family protein (HF=3e-1)
Module size	6 genes
NF	0.44
%ile	69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.8	0.97	Ta.2270.3.S1_at	CA610189	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.97	TaAffx.18131.1.S1_at	CA606191	-	-	4e-2	At1g51620	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.458.1.S1_at	BF201579	-	-	1e-11	At1g32360	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.10883.1.S1_x_at	CK193711	-	-	2e-1	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.9523.1.S1_at	CK161553	-	-	4e+0	At3g26050	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	TaAffx.24357.1.S1_at	BJ310144	-	-	1e-20	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.5	99.8	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
23.4	99.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
22.4	99.8	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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