CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.224.1.S1_at

Gene name chitinase IV precursor
Homology with Arabidopsis Similar to At3g54420: ATEP3 (HF=1e-1)

Module size 6 genes

NF 0.94

%ile 99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 0.96 Ta.224.1.S1_at AF112966.1 chitinase IV precursor - 1e-1 At3g54420 ATEP3 O.I. H.G. S.X.
0.91 98.2 0.97 Ta.28.1.S1_at Y18212.1 glucan endo-1,3-beta-D-glucosidase - 6e-1 At3g23360 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.91 98.2 0.97 Ta.30501.1.S1_at CK205943 - - 2e-3 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.91 98.2 0.97 TaAffx.108556.1.S1_x_at CA692789 - - 1e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.83 93.4 0.96 TaAffx.108556.1.S1_at CA692789 - - 2e-2 At3g04720 PR4 (PATHOGENESIS-RELATED 4) O.I. H.G. S.X.
0.77 90.8 0.96 TaAffx.15327.1.S1_at AJ610775 Glucan endo-1,3-beta-D-glucosidase - 3e+0 At2g22850 AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 99.5 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.9 99.3 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.2 98.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8 98.4 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8 97.9 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3 97.6 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6 97.0 GSM143518 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9 96.1 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8 96.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the maize gene, Zm.1595.1.S1_at, orthologous to the query gene, Ta.224.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.1595.1.S1_at At3g54420 endochitinase A - 6e-1 At3g54420 ATEP3 O.I. H.G. S.X.
0.83 95.6 Zm.1596.1.S1_at At3g54420 - - 9e-1 At4g00880 auxin-responsive family protein O.I. H.G. S.X.
0.80 94.0 Zm.6822.2.S1_a_at At3g54420 receptor expression-enhancing protein 3 - 3e-2 At5g42560 abscisic acid-responsive HVA22 family protein O.I. H.G. S.X.
0.60 77.8 Zm.5962.1.S1_at At3g54420 glyoxalase I - 1e-17 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) O.I. H.G. S.X.
0.55 71.6 Zm.13188.3.S1_x_at At3g54420 hypothetical protein LOC100193240 - 8e-6 At2g37270 ATRPS5B (RIBOSOMAL PROTEIN 5B) O.I. H.G. S.X.
0.55 71.6 Zm.3350.2.A1_at At3g54420 U6 snRNA-associated Sm-like protein LSm4 - 7e-34 At5g27720 emb1644 (embryo defective 1644) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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