Co-expression analysis

Gene ID	Ta.224.1.S1_at
Gene name	chitinase IV precursor
Homology with Arabidopsis	Similar to At3g54420: ATEP3 (HF=1e-1)
Module size	6 genes
NF	0.94
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.9	99.3	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.2	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8	97.9	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.2522.3.A1_at, orthologous to the query gene, Ta.224.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	PtpAffx.2522.3.A1_at	At3g54420	hypothetical protein	-	6e-1	At3g18160	peroxin-3 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.123111.1.A1_at	At3g54420	-	-	7e-1	At3g13432	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.88299.1.A1_at	At3g54420	-	-	6e+0	At3g11810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.217640.1.S1_at	At3g54420	hypothetical protein	-	8e-1	At3g04800	ATTIM23-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.71504.1.S1_a_at	At3g54420	hypothetical protein	-	4e-1	At5g25940	early nodulin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.36902.3.A1_at	At3g54420	-	-	1e-19	At3g22850	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.24647.1.A1_at	At3g54420	-	-	9e-1	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.7102.1.A1_at	At3g54420	hypothetical protein	-	2e+0	At3g23180	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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