Co-expression analysis

Gene ID	Ta.224.1.S1_at
Gene name	chitinase IV precursor
Homology with Arabidopsis	Similar to At3g54420: ATEP3 (HF=1e-1)
Module size	6 genes
NF	0.94
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.96	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.97	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.96	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.96	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	99.5	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.9	99.3	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
8.2	98.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.8	97.9	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig4326_s_at, orthologous to the query gene, Ta.224.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.4	Contig4326_s_at	At3g54420	-	-	8e+0	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	Contig10268_at	At3g54420	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig8149_at	At3g54420	-	-	6e+0	At4g14225	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig17687_at	At3g54420	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig5949_s_at	At3g54420	-	-	2e+0	At4g14530	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig10433_at	At3g54420	-	-	3e+0	At3g45443	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig8825_at	At3g54420	-	-	2e+0	Atmg00920	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig5452_at	At3g54420	-	-	9e-22	At2g47250	RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig8085_at	At3g54420	-	-	2e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig6089_at	At3g54420	-	-	2e-23	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig14096_at	At3g54420	-	-	1e-1	At4g00165	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig25993_at	At3g54420	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig526_x_at	At3g54420	-	-	2e+0	At1g06530	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig24086_at	At3g54420	-	-	2e+0	At3g27950	early nodule-specific protein, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig22800_at	At3g54420	-	-	4e+0	At4g17585	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig8058_at	At3g54420	-	-	5e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.51	67.5	Contig12277_at	At3g54420	-	-	2e-1	At4g08690	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig5270_x_at	At3g54420	-	-	2e+0	At4g14430	IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig12748_at	At3g54420	-	-	6e-2	At1g80130	binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	HS06K19u_s_at	At3g54420	-	-	5e+0	At2g18400	ribosomal protein L6 family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	HVSMEb0009G08f_at	At3g54420	-	-	8e+0	At5g10870	ATCM2 (chorismate mutase 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig13091_s_at	At3g54420	-	-	4e+0	At1g79170	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig15685_at	At3g54420	-	-	7e-1	At1g23780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig19503_at	At3g54420	-	-	7e-1	At1g61930	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig10682_at	At3g54420	-	-	5e-1	At3g51010	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig2562_at	At3g54420	-	-	2e-29	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig24947_at	At3g54420	-	-	1e+0	At5g53070	ribosomal protein L9 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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