Co-expression analysis

Gene ID Ta.22143.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g53220: thioredoxin family protein (HF=3e+0)
Module size 7 genes
NF 0.33
%ile 54.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.80.87Ta.22143.1.S1_atCA725173--3e+0At3g53220thioredoxin family proteinO.I.H.G.S.X.
0.5072.40.92TaAffx.98744.1.S1_atCA683802--9e+0At3g52740unknown proteinO.I.H.G.S.X.
0.4058.40.87Ta.24710.1.S1_atCA678411--1e+0At1g21323unknown proteinO.I.H.G.S.X.
0.4058.40.88Ta.11004.1.S1_atBQ168350--1e+1At3g11930universal stress protein (USP) family proteinO.I.H.G.S.X.
0.3753.00.89Ta.8447.1.S1_x_atCA669038--2e+0At2g03190ASK16 (ARABIDOPSIS SKP1-LIKE 16)O.I.H.G.S.X.
0.2430.30.89TaAffx.55592.1.S1_atCA663917--8e-1At3g18330F-box family proteinO.I.H.G.S.X.
0.1415.80.89TaAffx.107587.1.S1_atCA697669--3e-1At3g14230RAP2.2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.499.4GSM298081Leaf tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.899.1GSM298079Leaf tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.598.9GSM298082Leaf tissue of Solstice at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.298.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.098.8GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
6.698.3GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.697.8GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.597.8GSM143518Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.597.8GSM143519Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.597.8GSM298080Leaf tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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