Co-expression analysis

Gene ID	Ta.221.1.S1_at
Gene name	chitinase II precursor
Homology with Arabidopsis	Similar to At1g54640: F-box family protein-related (HF=5e-1)
Module size	16 genes
NF	0.69
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.92	Ta.221.1.S1_at	AF112963.1	chitinase II precursor	-	5e-1	At1g54640	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.95	TaAffx.108908.2.S1_s_at	CA682574	-	-	4e+0	At3g25400	-	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.95	Ta.30739.2.S1_at	CA692019	-	-	2e-1	At2g19990	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.95	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.96	Ta.28.1.S1_at	Y18212.1	glucan endo-1,3-beta-D-glucosidase	-	6e-1	At3g23360	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.94	Ta.959.1.S1_at	CA721939	thaumatin-like protein	-	2e+0	At2g27580	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.75	89.8	0.95	TaAffx.108556.1.S1_x_at	CA692789	-	-	1e+0	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.95	TaAffx.108908.1.S1_x_at	CA684616	-	-	1e+0	At2g36450	HRD (HARDY)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.95	TaAffx.15327.1.S1_at	AJ610775	Glucan endo-1,3-beta-D-glucosidase	-	3e+0	At2g22850	AtbZIP6 (Arabidopsis thaliana basic leucine-zipper 6)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.93	TaAffx.116570.1.S1_x_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	TaAffx.81266.1.S1_at	CA687952	-	-	2e+1	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.108556.1.S1_at	CA692789	-	-	2e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.95	Ta.225.1.S1_at	AF112967.1	-	-	2e-4	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.92	Ta.27327.1.S1_x_at	BT009360.1	-	-	5e+0	At4g33730	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	Ta.30501.1.S1_at	CK205943	-	-	2e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.22619.1.S1_at	CA687670	-	-	8e+0	At4g32340	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	99.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
11.0	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.6	99.2	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.9	99.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6	97.8	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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