Co-expression analysis

Gene ID	Ta.2207.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g05780: RPN8A (RP NON-ATPASE SUBUNIT 8A) (HF=5e-25)
Module size	6 genes
NF	0.66
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.97	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.7274.3.S1_a_at	AJ612375	-	-	1e-3	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.30799.3.S1_a_at	CA720672	-	-	6e-2	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage