Co-expression analysis

Gene ID	Ta.21567.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g44590: 60S acidic ribosomal protein P2 (RPP2D) (HF=1e+0)
Module size	27 genes
NF	0.37
%ile	59.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	94.2	0.92	Ta.21567.1.S1_at	CA696314	-	-	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.95	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.111246.4.S1_at	CA652301	-	-	2e+1	Atmg01210	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	TaAffx.30782.1.S1_at	CA622085	-	-	2e+1	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	TaAffx.31313.1.S1_at	CA617546	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.93	Ta.6231.3.S1_x_at	CA694238	-	-	7e-5	At5g02270	ATNAP9	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.114767.1.S1_at	CA723425	-	-	3e-3	At4g17600	LIL3:1	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.59962.1.S1_at	CA593058	-	-	1e-9	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.27219.2.S1_at	CA679572	-	-	4e-6	At4g38920	ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	TaAffx.8331.1.S1_at	CA627107	-	-	3e-4	At1g06020	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.94	Ta.6666.2.S1_a_at	CA640317	-	-	5e-12	At3g49420	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.94	Ta.8457.1.A1_x_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.7714.3.S1_x_at	CA638977	-	-	1e+0	At1g16700	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	TaAffx.111296.1.S1_x_at	CA644002	-	-	9e-1	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.96	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.0	94.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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