Co-expression analysis

Gene ID	Ta.214.2.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g12250: TUB6 (BETA-6 TUBULIN) (HF=1e-131)
Module size	6 genes
NF	0.73
%ile	94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.214.2.A1_x_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Ta.28022.2.A1_at	BJ309684	-	-	1e-47	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.97	Ta.214.2.A1_at	BJ231272	-	-	1e-131	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.2864.1.S1_at	CK208206	-	-	5e-7	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.3003.1.S1_s_at	BE398996	-	-	3e-44	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.2270.1.S1_at	BQ168154	-	-	1e+0	At1g14380	IQD28 (IQ67 DOMAIN PROTEIN 28)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM138137	Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
4.8	97.2	GSM111211	genotype B11 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.4	96.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM111177	genotype E5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM111186	genotype B68 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM111205	genotype B10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6	92.9	GSM111220	genotype H23 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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