CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2138.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)

Module size 6 genes

NF 0.61

%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.0 0.95 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.64914.1.S1_at BJ270115 - - 4e+0 At1g51915 cryptdin protein-related O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.108544.1.S1_x_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.71 88.0 0.95 TaAffx.108544.1.S1_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.36 51.9 0.95 Ta.19591.2.A1_a_at CA651113 - - 4e+0 At5g11500 unknown protein O.I. H.G. S.X.
0.23 29.0 0.95 TaAffx.111311.1.S1_at CA643595 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.8 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.2 99.6 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7 98.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5 96.9 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6 95.6 GSM143522 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6 95.6 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5 95.4 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.62.1.A1_at, orthologous to the query gene, Ta.2138.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 ZmAffx.62.1.A1_at At1g55840 coronatine-insensitive protein 1 - 3e+0 At2g01370 DNA-binding storekeeper protein-related O.I. H.G. S.X.
0.44 55.7 ZmAffx.306.1.A1_at At1g55840 - - 2e+0 At1g36020 - O.I. H.G. S.X.
0.33 36.0 Zm.9142.1.A1_at At1g55840 - - 4e-1 At3g23170 unknown protein O.I. H.G. S.X.
0.31 31.6 Zm.9763.1.A1_at At1g55840 - - 1e+0 At3g10590 myb family transcription factor O.I. H.G. S.X.
0.18 11.6 Zm.13447.1.S1_at At1g55840 chaperone protein dnaJ 10 - 2e-11 At1g21080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.13 6.8 RPTR-Zm-U89963-1_x_at At1g55840 - - O.I. H.G. S.X.
0.13 6.8 Zm.9756.1.A1_at At1g55840 - - 5e+0 At5g38800 AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera

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