CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2138.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)

Module size 6 genes

NF 0.61

%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.0 0.95 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.64914.1.S1_at BJ270115 - - 4e+0 At1g51915 cryptdin protein-related O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.108544.1.S1_x_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.71 88.0 0.95 TaAffx.108544.1.S1_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.36 51.9 0.95 Ta.19591.2.A1_a_at CA651113 - - 4e+0 At5g11500 unknown protein O.I. H.G. S.X.
0.23 29.0 0.95 TaAffx.111311.1.S1_at CA643595 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.8 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.2 99.6 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7 98.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5 96.9 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6 95.6 GSM143522 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6 95.6 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5 95.4 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the rice gene, Os05g0449500, orthologous to the query gene, Ta.2138.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os05g0449500 At1g55840 - COI1 5e+0 At5g48890 transcription factor O.I. H.G. S.X.
0.73 91.1 Os02g0324300 At1g55840 - Protein of unknown function DUF572 family protein 1e-14 At1g25682 cell cycle control protein-related O.I. H.G. S.X.
0.50 68.0 Os01g0296100 At1g55840 - - 1e-34 At5g14640 SK13 (SHAGGY-LIKE KINASE 13) O.I. H.G. S.X.
0.29 31.1 Os08g0127700 At1g55840 - Conserved hypothetical protein 2e-48 At4g37120 SMP2 O.I. H.G. S.X.
0.19 15.1 Os02g0823000 At1g55840 - Protease-associated PA domain containing protein 2e-20 At1g63690 protease-associated (PA) domain-containing protein O.I. H.G. S.X.
0.15 10.3 Os01g0908500 At1g55840 - Mg2+ transporter protein, CorA-like family protein 2e-5 At3g19640 magnesium transporter CorA-like family protein (MRS2-3) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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