CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.2138.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)

Module size 6 genes

NF 0.61

%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.0 0.95 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.64914.1.S1_at BJ270115 - - 4e+0 At1g51915 cryptdin protein-related O.I. H.G. S.X.
0.80 92.2 0.95 TaAffx.108544.1.S1_x_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.71 88.0 0.95 TaAffx.108544.1.S1_at CA663841 - - 1e+1 At4g27270 quinone reductase family protein O.I. H.G. S.X.
0.36 51.9 0.95 Ta.19591.2.A1_a_at CA651113 - - 4e+0 At5g11500 unknown protein O.I. H.G. S.X.
0.23 29.0 0.95 TaAffx.111311.1.S1_at CA643595 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	81.0	0.95	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.
0.80	92.2	0.95	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.
0.80	92.2	0.95	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.
0.71	88.0	0.95	TaAffx.108544.1.S1_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.
0.36	51.9	0.95	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.
0.23	29.0	0.95	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.4 99.8 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.2 99.6 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7 98.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM143521 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5 96.9 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6 95.6 GSM143522 Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6 95.6 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5 95.4 GSM143502 Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.4	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.2	99.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6	95.6	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the barley gene, HU05A05u_s_at, orthologous to the query gene, Ta.2138.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 HU05A05u_s_at At1g55840 - - 4e+0 At4g12030 bile acid:sodium symporter family protein O.I. H.G. S.X.
0.49 63.7 Contig9351_s_at At1g55840 - - 1e+0 At5g42070 unknown protein O.I. H.G. S.X.
0.39 50.5 Contig12656_s_at At1g55840 - - 8e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) O.I. H.G. S.X.
0.34 43.6 Contig10471_at At1g55840 - - 2e+0 At4g29030 glycine-rich protein O.I. H.G. S.X.
0.33 42.6 Contig11474_at At1g55840 - - 3e-6 At1g32850 UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) O.I. H.G. S.X.
0.32 40.3 Contig19804_at At1g55840 - - 2e+0 At3g54040 photoassimilate-responsive protein-related O.I. H.G. S.X.
0.31 38.6 Contig2046_at At1g55840 - - 5e+0 At1g60815 RALFL7 (RALF-LIKE 7) O.I. H.G. S.X.
0.30 37.0 HVSMEn0022P11f_s_at At1g55840 - - 4e+0 At4g13450 universal stress protein (USP) family protein O.I. H.G. S.X.
0.29 35.5 Contig25401_at At1g55840 - - 4e-3 At1g78710 unknown protein O.I. H.G. S.X.
0.29 35.5 Contig5911_at At1g55840 ES43 protein - 9e-3 At4g22140 DNA binding / protein binding / zinc ion binding O.I. H.G. S.X.
0.29 35.5 Contig23171_at At1g55840 - - 2e+0 At1g11570 nuclear transport factor 2 (NTF2), putative O.I. H.G. S.X.
0.28 35.5 Contig12263_at At1g55840 - - 2e-16 At3g26570 PHT2 O.I. H.G. S.X.
0.28 35.5 Contig3848_at At1g55840 - - 7e-23 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.27 32.1 Contig10992_at At1g55840 - - 7e-1 At1g16250 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.26 30.4 Contig4476_at At1g55840 - - 7e-26 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.
0.24 27.2 Contig13036_at At1g55840 - - 6e-1 At3g57000 nucleolar essential protein-related O.I. H.G. S.X.
0.23 26.1 Contig4654_at At1g55840 - - 2e-2 At3g57930 unknown protein O.I. H.G. S.X.
0.22 24.2 Contig1478_s_at At1g55840 - - 2e+0 At3g17300 - O.I. H.G. S.X.
0.22 24.2 Contig9733_s_at At1g55840 - - 4e-1 At5g27860 unknown protein O.I. H.G. S.X.
0.21 22.6 Contig14340_at At1g55840 - - 5e+0 At4g06634 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.21 22.6 Contig3125_at At1g55840 - - 2e-15 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) O.I. H.G. S.X.
0.19 19.6 Contig12241_at At1g55840 - - 9e+0 At5g44550 integral membrane family protein O.I. H.G. S.X.
0.19 19.6 Contig14972_s_at At1g55840 - - 4e+0 At1g58725 GDSL-motif lipase, putative O.I. H.G. S.X.
0.18 18.2 Contig7725_at At1g55840 - - 8e-1 At1g22180 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.
0.17 16.9 Contig2937_s_at At1g55840 - - 9e-27 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.14 12.9 Contig5296_at At1g55840 - - 4e-25 At1g64550 ATGCN3 O.I. H.G. S.X.
0.12 10.4 Contig14904_at At1g55840 - - 2e+0 At2g28330 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	HU05A05u_s_at	At1g55840	-	-	4e+0	At4g12030	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.
0.49	63.7	Contig9351_s_at	At1g55840	-	-	1e+0	At5g42070	unknown protein	O.I.	H.G.	S.X.
0.39	50.5	Contig12656_s_at	At1g55840	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.
0.34	43.6	Contig10471_at	At1g55840	-	-	2e+0	At4g29030	glycine-rich protein	O.I.	H.G.	S.X.
0.33	42.6	Contig11474_at	At1g55840	-	-	3e-6	At1g32850	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	O.I.	H.G.	S.X.
0.32	40.3	Contig19804_at	At1g55840	-	-	2e+0	At3g54040	photoassimilate-responsive protein-related	O.I.	H.G.	S.X.
0.31	38.6	Contig2046_at	At1g55840	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	O.I.	H.G.	S.X.
0.30	37.0	HVSMEn0022P11f_s_at	At1g55840	-	-	4e+0	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.29	35.5	Contig25401_at	At1g55840	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	Contig5911_at	At1g55840	ES43 protein	-	9e-3	At4g22140	DNA binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.29	35.5	Contig23171_at	At1g55840	-	-	2e+0	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.
0.28	35.5	Contig12263_at	At1g55840	-	-	2e-16	At3g26570	PHT2	O.I.	H.G.	S.X.
0.28	35.5	Contig3848_at	At1g55840	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.
0.27	32.1	Contig10992_at	At1g55840	-	-	7e-1	At1g16250	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.26	30.4	Contig4476_at	At1g55840	-	-	7e-26	At5g63620	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.24	27.2	Contig13036_at	At1g55840	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.
0.23	26.1	Contig4654_at	At1g55840	-	-	2e-2	At3g57930	unknown protein	O.I.	H.G.	S.X.
0.22	24.2	Contig1478_s_at	At1g55840	-	-	2e+0	At3g17300	-	O.I.	H.G.	S.X.
0.22	24.2	Contig9733_s_at	At1g55840	-	-	4e-1	At5g27860	unknown protein	O.I.	H.G.	S.X.
0.21	22.6	Contig14340_at	At1g55840	-	-	5e+0	At4g06634	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.21	22.6	Contig3125_at	At1g55840	-	-	2e-15	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.
0.19	19.6	Contig12241_at	At1g55840	-	-	9e+0	At5g44550	integral membrane family protein	O.I.	H.G.	S.X.
0.19	19.6	Contig14972_s_at	At1g55840	-	-	4e+0	At1g58725	GDSL-motif lipase, putative	O.I.	H.G.	S.X.
0.18	18.2	Contig7725_at	At1g55840	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.
0.17	16.9	Contig2937_s_at	At1g55840	-	-	9e-27	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.14	12.9	Contig5296_at	At1g55840	-	-	4e-25	At1g64550	ATGCN3	O.I.	H.G.	S.X.
0.12	10.4	Contig14904_at	At1g55840	-	-	2e+0	At2g28330	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Ta.2138.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)
Module size	6 genes
NF	0.61
%ile	86.4

Co-expression analysis

Gene ID Ta.2138.2.S1_at Gene name Homology with ArabidopsisSimilar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0) Module size 6 genes NF 0.61 %ile 86.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Ta.2138.2.S1_at

Gene name
Homology with Arabidopsis Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)

Module size 6 genes

NF 0.61

%ile 86.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays