Co-expression analysis

Gene ID	Ta.2138.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g55840: SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein (HF=1e+0)
Module size	6 genes
NF	0.61
%ile	86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.95	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.95	TaAffx.64914.1.S1_at	BJ270115	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.95	TaAffx.108544.1.S1_x_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.71	88.0	0.95	TaAffx.108544.1.S1_at	CA663841	-	-	1e+1	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.19591.2.A1_a_at	CA651113	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.4	99.8	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
16.2	99.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.5	96.9	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6	95.6	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.6	95.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.5	95.4	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.70105.1.S1_at, orthologous to the query gene, Ta.2138.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	63.3	GmaAffx.70105.1.S1_at	At1g55840	-	-	5e-9	At3g13060	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.80777.1.S1_at	At1g55840	-	-	6e-5	At1g75110	RRA2 (REDUCED RESIDUAL ARABINOSE 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.93267.1.S1_s_at	At1g55840	nodulin 35	-	3e-10	At2g26230	uricase / urate oxidase / nodulin 35, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.58877.1.S1_at	At1g55840	-	-	2e-57	At4g00710	BSK3 (BR-SIGNALING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.75704.1.S1_at	At1g55840	-	-	7e-1	At4g09940	avirulence-responsive family protein / avirulence induced gene (AIG1) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.93138.1.S1_s_at	At1g55840	-	-	2e-27	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.91170.1.S1_x_at	At1g55840	-	-	5e-58	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.9706.3.S1_x_at	At1g55840	-	-	2e-5	At2g39840	TOPP4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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