Co-expression analysis

Gene ID	Ta.2127.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g11170: ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding (HF=6e-33)
Module size	8 genes
NF	0.54
%ile	80.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.95	Ta.2127.3.S1_a_at	CA731487	-	-	6e-33	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.96	TaAffx.51698.1.S1_s_at	CA720381	core3ft protein	-	4e+0	At4g33480	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.3075.2.S1_x_at	CA601469	-	-	4e-14	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.3075.3.S1_a_at	CA608966	-	-	1e-3	At3g04600	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.81113.1.S1_s_at	CA689395	-	-	4e+0	At5g54190	PORA	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.1178.2.S1_at	BG909050	-	-	1e-1	At2g07775	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.96	TaAffx.115985.2.S1_s_at	BQ606839	-	-	6e-2	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.96	TaAffx.123475.1.S1_at	CF133706	-	-	3e-6	At2g16950	TRN1 (TRANSPORTIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.0	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.2	96.6	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3	95.0	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.3	95.0	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.9	94.0	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage