Co-expression analysis

Gene ID	Ta.21200.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g19100: calcium-dependent protein kinase, putative / CDPK, putative (HF=2e-4)
Module size	11 genes
NF	0.53
%ile	79.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.96	Ta.21200.1.S1_x_at	BT009309.1	-	-	2e-4	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.97	Ta.9740.1.A1_at	BU607153	-	-	2e-12	At3g48380	-	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.7265.2.A1_at	BJ301953	-	-	4e+0	At5g62200	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.98	Ta.2282.1.S1_a_at	CA602264	-	-	2e-14	At1g20760	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.98	Ta.6725.1.S1_at	CK208802	-	-	3e+0	Atmg00980	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.386.1.S1_at	BF473976	-	-	6e-6	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.26089.1.A1_at	BQ237184	-	-	1e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.22989.1.S1_x_at	CA721956	-	-	2e-27	At5g58030	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.7525.1.A1_s_at	CK155396	-	-	3e-2	At5g49570	AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.8133.1.S1_at	CA655541	-	-	2e-1	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	TaAffx.50744.1.S1_at	CA735974	-	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.3	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.1	96.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.9	96.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.7	95.8	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.5	95.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
3.2	94.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage