Co-expression analysis

Gene ID	Ta.21086.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g20930: - (HF=3e-16)
Module size	30 genes
NF	0.37
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	92.7	0.97	Ta.21086.2.S1_x_at	BJ307886	-	-	3e-16	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.1053.2.S1_x_at	CA686041	-	-	1e-4	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.98	Ta.3887.3.A1_s_at	BJ248686	-	-	2e-2	At1g53780	ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding / peptidyl-prolyl cis-trans isomerase	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.98	Ta.822.2.S1_x_at	CD901100	-	-	1e-90	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.98	Ta.4770.1.S1_x_at	CK162188	-	-	4e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.4980.1.S1_at	CK213203	-	-	9e+0	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.98	Ta.8146.1.S1_at	BJ320719	-	-	6e-30	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.98	Ta.6402.1.S1_at	CK151576	-	-	2e-1	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.22845.1.S1_at	BJ215922	tat binding protein	-	7e-54	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.1398.1.S1_a_at	BQ802527	-	-	2e-33	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.28553.8.S1_x_at	BJ217307	ubiquitin	-	6e-106	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.98	Ta.7485.1.S1_at	CK211619	-	-	3e-9	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.8151.1.S1_at	BQ804186	-	-	3e+0	Atmg00890	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.98	Ta.1087.1.S1_s_at	CK169309	-	-	3e-5	At3g25220	FKBP15-1	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.28742.4.S1_x_at	BJ286746	-	-	1e-82	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.6924.1.S1_at	BQ744409	-	-	8e-1	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.3495.1.S1_a_at	BQ166285	-	-	1e+1	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.98	Ta.13180.2.S1_x_at	BJ263702	-	-	2e-5	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.21374.2.S1_at	CK208435	-	-	8e-66	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.98	Ta.23008.1.S1_at	BJ262674	-	-	1e-2	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.98	Ta.28742.2.S1_x_at	BJ217937	-	-	2e-144	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.98	Ta.6566.1.S1_at	CD914098	-	-	3e-71	At2g20140	26S protease regulatory complex subunit 4, putative	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.98	Ta.1714.1.A1_at	CK171428	-	-	3e-2	At4g39190	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.1096.2.S1_x_at	CA601240	-	-	2e-2	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.98	Ta.2291.1.S1_x_at	CK215947	ADP-ribosylation factor	-	3e-111	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.98	Ta.2207.1.S1_at	CK200975	-	-	2e-56	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.98	Ta.25017.1.S1_at	CD901339	-	-	4e-21	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.2502.2.A1_x_at	CD865828	HSP80-2	-	3e-57	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.18.1.S1_at	BJ241578	-	-	2e-113	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.7	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.8	93.6	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.6	92.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.3	91.5	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.1	90.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.1	90.3	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage