Co-expression analysis

Gene ID	Ta.20649.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g68020: ATTPS6 (HF=7e-11)
Module size	6 genes
NF	0.23
%ile	38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.8	0.90	Ta.20649.1.S1_x_at	BU100263	-	-	7e-11	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.89	Ta.3840.1.S1_at	CD919677	-	-	4e-5	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.88	Ta.20649.1.S1_a_at	BU100263	-	-	7e-11	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.90	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.89	Ta.1275.1.S1_at	CA619292	-	-	1e+1	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.89	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1608440_at, orthologous to the query gene, Ta.20649.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	1608440_at	At1g68020	hypothetical protein LOC100252552	-	8e-43	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.60	81.9	1622287_at	At1g68020	hypothetical protein LOC100245285	-	1e+0	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1610007_at	At1g68020	hypothetical protein LOC100254064	-	2e+0	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1616076_s_at	At1g68020	hypothetical protein LOC100263773	-	7e-1	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1607931_s_at	At1g68020	hypothetical protein LOC100254064	-	2e+0	At2g25950	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	1617037_at	At1g68020	hypothetical protein LOC100264477	-	5e+0	At5g65390	AGP7	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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