CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.20649.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At1g68020: ATTPS6 (HF=7e-11)

Module size 6 genes

NF 0.23

%ile 38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.8 0.90 Ta.20649.1.S1_x_at BU100263 - - 7e-11 At1g68020 ATTPS6 O.I. H.G. S.X.
0.50 72.4 0.89 Ta.3840.1.S1_at CD919677 - - 4e-5 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative O.I. H.G. S.X.
0.32 44.4 0.88 Ta.20649.1.S1_a_at BU100263 - - 7e-11 At1g68020 ATTPS6 O.I. H.G. S.X.
0.17 19.8 0.90 Ta.28185.1.S1_at AL820475 - - 2e-4 At3g46900 COPT2 O.I. H.G. S.X.
0.16 18.2 0.89 Ta.1275.1.S1_at CA619292 - - 1e+1 At2g36100 integral membrane family protein O.I. H.G. S.X.
0.11 12.4 0.89 TaAffx.20065.1.S1_at CK207580 - - 2e-1 At3g45970 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.2 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
9.7 99.1 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.5 99.1 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
7.8 98.7 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
6.4 98.2 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
5.7 97.9 GSM298061 Crown tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.9 97.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os09g0397300, orthologous to the query gene, Ta.20649.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 Os09g0397300 At1g68020 - Glycosyl transferase, family 20 domain containingprotein 7e-28 At1g68020 ATTPS6 O.I. H.G. S.X.
0.50 68.0 Os10g0207400 At1g68020 - Conserved hypothetical protein 4e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.40 51.1 Os08g0516900 At1g68020 - Conserved hypothetical protein 8e-3 At3g55460 SCL30 O.I. H.G. S.X.
0.33 38.8 Os01g0729900 At1g68020 - Conserved hypothetical protein 2e-15 At1g53450 unknown protein O.I. H.G. S.X.
0.29 31.1 Os05g0425700 At1g68020 - F-box protein AtFBL5 2e-4 At1g21410 SKP2A O.I. H.G. S.X.
0.29 31.1 Os03g0183300 At1g68020 - Pathogenesis-related transcriptional factor andERF domain containing protein 4e+0 At5g46873 - O.I. H.G. S.X.
0.08 4.2 Os03g0796900 At1g68020 - BZIP protein 4e-6 At3g54620 BZIP25 (BASIC LEUCINE ZIPPER 25) O.I. H.G. S.X.
0.03 1.4 Os09g0372900 At1g68020 - Cyclin-like F-box domain containing protein 8e-1 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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