Co-expression analysis

Gene ID Ta.20649.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At1g68020: ATTPS6 (HF=7e-11)
Module size 6 genes
NF 0.23
%ile 38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4666.80.90Ta.20649.1.S1_x_atBU100263--7e-11At1g68020ATTPS6O.I.H.G.S.X.
0.5072.40.89Ta.3840.1.S1_atCD919677--4e-5At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.3244.40.88Ta.20649.1.S1_a_atBU100263--7e-11At1g68020ATTPS6O.I.H.G.S.X.
0.1719.80.90Ta.28185.1.S1_atAL820475--2e-4At3g46900COPT2O.I.H.G.S.X.
0.1618.20.89Ta.1275.1.S1_atCA619292--1e+1At2g36100integral membrane family proteinO.I.H.G.S.X.
0.1112.40.89TaAffx.20065.1.S1_atCK207580--2e-1At3g45970ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.799.1GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.599.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.898.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.498.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.797.9GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.997.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM298094Crown tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig3375_at, orthologous to the query gene, Ta.20649.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7790.8Contig3375_atAt1g68020--1e-12At1g68020ATTPS6O.I.H.G.S.X.
0.6784.7Contig9859_atAt1g68020--6e+0At5g66930unknown proteinO.I.H.G.S.X.
0.6784.7Contig11663_atAt1g68020--3e-2At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.6077.3Contig3372_s_atAt1g68020--6e-2At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.5066.9Contig13130_atAt1g68020--6e-1At4g16380metal ion bindingO.I.H.G.S.X.
0.4458.9Contig7751_atAt1g68020--4e-2At3g16565ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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